Workshops

PreMiEr is excited to offer the following workshops and educational activities to faculty and scholars within the ERC, and to those affiliated with PreMiEr labs. These workshops are offered by PreMiEr faculty through the Engineering Workforce Development (EWD) foundation of PreMiEr, or in partnership with external collaborators.

Spring 2025

PreMiEr Workshops

The following workshops are available to PreMiEr faculty and scholars, or students affiliated with PreMiEr faculty lab groups, and may be registered for individually. Additional workshops are currently being finalized and will be added to this page and the registration link at a later time. Unless otherwise noted, all workshops will be either hybrid or entirely online (Zoom), from 1-4 pm on the date listed. The individual instructors will provide you with a Zoom link prior to the event.

The link for members to register for PreMiEr Spring 2025 workshops is HERE.

Introduction to High-Throughput Sequencing (January 13th)

Taught online by Dr. Joshua Granek of Duke University. Registered participants will receive an email with information about the course.

Amplicon Bioinformatics (March 17th)

Taught online by Dr. Joshua Granek of Duke University. Registered participants will receive an email with information about the course. The deadline to register for this workshop is March 10th, 2025.

PreMiEr-Associated Workshops

The following workshop series are available in-person and online to PreMiEr scholars and researchers through the Quantitative Methods for HIV Researchers series at Duke University. Non-Duke participants are encouraged. Please see the details of each series. Note that these workshops have a separate registration link and registrants are required to attend the entire series.

Quantitative Methods for HIV Researchers | Part 2 | Statistical Thinking Workshops (January 24 - March 3)

From: https://cfar.duke.edu/cores/quantitative-sciences-core/r25/workshops

The Quantitative Methods for HIV/AIDS workshop series is designed to provide HIV (and other) researchers with a hands-on introduction to quantitative analyses both through simple and large, complex data sets. These NIH-funded workshops are open to graduate students, postdocs, medical fellows, staff, and faculty working in the HIV/AIDS field. Non-Duke-affiliated applicants are welcome.

Each part of the series consists of six once-a-week workshops held on Mondays from 1 – 4 PM. The seminars will be at Hock Plaza, and participants are encouraged to attend in person to get the most benefit. Those unable to attend in person have the option to attend virtually. Enrollment is capped at 36 participants, and participants who enroll after the cap is met will be added to a waitlist.

Part II workshops will build on the statistical concepts discussed in Part 1 and the utilization of predictive models using previously published HIV data. Attendees will learn important concepts in statistics and perform statistical analyses using real HIV data. We will introduce hypothesis testing, multiple testing correction, linear and logistic regression, and high dimensional modeling. The final day is scheduled as a design studio where participants can sign up to discuss their work and receive feedback from instructors and fellow workshop attendees.

NOTE: The material presented in Part I is a pre-requisite for Part II and Part III. Participants fluent with R, RStudio, and Git may skip the Part I Workshops, but must understand that the material covered in Part I will not be reviewed in Part II and Part III. Part I seminars will be recorded for attendees unable to attend Part I but interested in Parts II/III. Priority registration will be given to those who attended the previous parts.

Registration
REGISTER HERE by January 15, 2025.

PART II: Statistical Thinking Workshops

Date Workshop Description
Monday, Jan 27, 2025 Hypotheses, non-parametric tests, power, and error
Monday, Feb 3, 2025 Linear regression, categorical predictors, interaction effect
Monday, Feb 10, 2025 Logistic regression and classification models
Monday, Feb 17, 2025 Random Forest and Penalized Regression
Monday, Feb 24, 2025 High-dimensional predictive models, cross-validation
Monday, March 3, 2025 Bring Your Own Research: Study Design Guidance and Mentoring Session
Quantitative Methods for HIV Researchers | Part 3 | Bioinformatics Workshops (March 10 - April 21)

From: https://cfar.duke.edu/cores/quantitative-sciences-core/r25/workshops

The Quantitative Methods for HIV/AIDS workshop series is designed to provide HIV (and other) researchers with a hands-on introduction to quantitative analyses both through simple and large, complex data sets. These NIH-funded workshops are open to graduate students, postdocs, medical fellows, staff, and faculty working in the HIV/AIDS field. Non-Duke-affiliated applicants are welcome.

Each part of the series consists of six once-a-week workshops held on Mondays from 1 – 4 PM. The seminars will be at Hock Plaza, and participants are encouraged to attend in person to get the most benefit. Those unable to attend in person have the option to attend virtually. Enrollment is capped at 36 participants, and participants who enroll after the cap is met will be added to a waitlist.

Part II workshops will build on the statistical concepts discussed in Part 1 and the utilization of predictive models using previously published HIV data. Attendees will learn important concepts in statistics and perform statistical analyses using real HIV data. We will introduce hypothesis testing, multiple testing correction, linear and logistic regression, and high dimensional modeling. The final day is scheduled as a design studio where participants can sign up to discuss their work and receive feedback from instructors and fellow workshop attendees.

NOTE: The material presented in Part I is a pre-requisite for Part II and Part III. Participants fluent with R, RStudio, and Git may skip the Part I Workshops, but must understand that the material covered in Part I will not be reviewed in Part II and Part III. Part I seminars will be recorded for attendees unable to attend Part I but interested in Parts II/III. Priority registration will be given to those who attended the previous parts.

Registration
REGISTER HERE by January 15, 2025.

PART III: Bioinformatics Workshops

Date Workshop Description
Monday, March 10, 2025 Introduction to High-throughput sequencing
Monday, March 17, 2025 Bioinformatics for RNA-seq
Monday, March 24, 2025 Statistical Analysis for RNA-seq
Monday, March 31, 2025 Bioinformatics for scRNA-seq
Monday, April 7, 2025 Pseudo-bulking, reference mapping, cluster annotation, and visualization
Monday, April 21, 2025 Walk-through data analysis plan

 

Historical Offerings

Fall 2024

PreMiEr Workshops

The following workshops are available to PreMiEr faculty and scholars, or students affiliated with PreMiEr faculty lab groups, and may be registered for individually. Registration for these workshops is currently closed.

August 26 | Biology & Microbiomes

Virtual (Zoom) | 1 – 4 pm.

Taught by Dr. Misty Thomas of N.C. A&T, this workshop is intended to give a broad overview of biological topics related to microbiome research. The intended audience is PreMiEr members with expertise outside of biology or microbiology, or those looking for a refresher on those topics.

Registration closes: August 21

September 9 | Overview of Microbiome Lab Techniques

Virtual (Zoom) | 1 – 4 pm.

Taught by Dr. Cynthia Gibas and Dr. Jessica Schlueter of UNC Charlotte, this workshop is intended to give an overview of lab techniques relevant to sampling and analyzing microbiomes of the built environment.

Registration closes: September 2nd

September 16 | Illumina "Lab-in-a-Box" Virtual Session

Virtual (Zoom) | 1 – 4 pm.

Taught by representatives of PreMiEr Industry Member, Illumina, this workshop introduces participants to sequencing pipelines using Illumina technology.

This is a companion workshop to the Illumina “hands-on” experience at either Duke University (September 30th) or North Carolina Agricultural and Technical State University (October 4th).

Registrants should sign up for this virtual workshop and an associated hands-on workshop at either Duke or N.C. A&T. Space may be limited.

September 30 | Illumina "Lab-in-a-Box" Hands-on Session (@ Duke)

In-person | Duke University | 1 – 4 pm.

Sponsored by PreMiEr Industry Member  Illumina, this “lab-in-a-box” experience at Duke University is a 3-hour, in-person, hands-on workshop that gives participants experience in library preparation for next-generation sequencing and an introduction to sequencing pipelines but one of the world’s leading companies in the field.

Registrants who sign up for this hands-on workshop must also attend the September 16th virtual workshop. Space may be limited.

 

October 4 | Illumina "Lab-in-a-Box" Hands-on Session (@ N.C. A&T)

In-person | N.C. A&T University | 10-2 pm (tentative)

Sponsored by PreMiEr Industry Member  Illumina, this “lab-in-a-box” experience at North Carolina Agricultural and Technical State University is a 3-hour, in-person, hands-on workshop that gives participants experience in library preparation for next-generation sequencing and an introduction to sequencing pipelines but one of the world’s leading companies in the field.

Registrants who sign up for this hands-on workshop must also attend the September 16th virtual workshop. Space may be limited.

RESCHEDULED TO SPRING 2025 | Overview of Microbiome Informatics

Virtual (Zoom) | 2:30 – 5 pm.

Taught by Dr. Anthony Fodor of UNC Charlotte, this workshop is intended to give an overview of topics related to analyzing bioinformatic data sets related to microbiomes of the built environment.

Registration closes: September 30th

PreMiEr-Associated Workshops

The following workshop series are available in-person and online to PreMiEr scholars and researchers through the Quantitative Methods for HIV Researchers series at Duke University. Non-Duke participants are encouraged. Please see the details of each series. Note that these workshops have a separate registration link and registrants are required to attend the entire series.

Quantitative Methods for HIV Researchers | Part 1 | Data Science Workshops (October 7 - November 25)

From: https://cfar.duke.edu/cores/quantitative-sciences-core/r25/workshops

The Quantitative Methods for HIV/AIDS workshop series is designed to provide HIV (and other) researchers with a hands-on introduction to quantitative analyses both through simple and large, complex data sets. These NIH-funded workshops are open to graduate students, postdocs, medical fellows, staff, and faculty working in the HIV/AIDS field. Non-Duke-affiliated applicants are welcome.

Each part of the series consists of six once-a-week workshops held on Mondays from 1 – 4 PM. The seminars will be at Hock Plaza, and participants are encouraged to attend in person to get the most benefit. Those unable to attend in person have the option to attend virtually. Enrollment is capped at 36 participants, and participants who enroll after the cap is met will be added to a waitlist.

Part II workshops will build on the statistical concepts discussed in Part 1 and the utilization of predictive models using previously published HIV data. Attendees will learn important concepts in statistics and perform statistical analyses using real HIV data. We will introduce hypothesis testing, multiple testing correction, linear and logistic regression, and high dimensional modeling. The final day is scheduled as a design studio where participants can sign up to discuss their work and receive feedback from instructors and fellow workshop attendees.

NOTE: The material presented in Part I is a pre-requisite for Part II and Part III. Participants fluent with R, RStudio, and Git may skip the Part I Workshops, but must understand that the material covered in Part I will not be reviewed in Part II and Part III. Part I seminars will be recorded for attendees unable to attend Part I but interested in Parts II/III. Priority registration will be given to those who attended the previous parts.

Registration

Registration for this workshop series is closed.

PART I: Data ScienceWorkshops

Monday, Oct 7 Introduction to R (not required)
Monday, Oct 21 Intro to Data Driven Research, Part 1
Monday, Oct 28 Intro to Data Driven Research, Part 2
Monday, Nov 4 Exploratory analysis and visualization, Part 1
Monday, Nov 11 Exploratory analysis and visualization, Part 2
Monday, Nov 18 Exploratory analysis and visualization, Part 3
Monday, Nov 25 Case Study Walk-through

Spring 2024

PreMiEr Workshops

The following workshops are available to PreMiEr faculty and scholars, and may be registered for individually. Please use this link to register for these workshops.

Unless otherwise noted, workshops will be held from 1 – 4 pm on the dates indicated. Registration closes at 11:59 pm on the date indicated.

Introduction to High-Throughput Sequencing (March 4th)

Taught hybrid by Dr. Joshua Granek of Duke University. Registration for this workshop closes February 26th, 2024. Registered participants will receive an email with information about the course.

Amplicon Bioinformatic and Statistical Analysis (March 18th)

Taught hybrid by Dr. Joshua Granek of Duke University. Registration for this workshop closes March 11th, 2024. Registered participants will receive an email with information about the course.

Phylogeny (March 25th)

Taught hybrid by Dr. Alex Dornburg of the University of North Carolina at Charlotte. Registration for this workshop closes March 18th, 2024. Registered participants will receive an email with information about the course.

Sequence classification methods for shotgun metagenomics (April 1st)

Taught hybrid by faculty of the University of North Carolina at Charlotte. Registration for this workshop closes March 25th, 2024. Registered participants will receive an email with information about the course.

Beyond shotgun: Hi-C metagenomics workflow (April 8th)

Taught hybrid by faculty from the University of North Carolina at Charlotte. Registration for this workshop closes April 1st, 2024. Registered participants will receive an email with information about the course.

(Note: This workshop was previously scheduled for April 15th but has been moved. You do not need to re-register if you have signed up already.)

Statistics for shotgun metagenomics (April 15th)

Taught hybrid by faculty members of the University of North Carolina at Charlotte. Registration for this workshop closes April 8th, 2024. Registered participants will receive an email with information about the course.

(Note: This workshop was previously scheduled for April 8th but has been moved. You do not need to re-register if you have signed up already.)

PreMiEr-Associated Workshops

The following series of six workshops are part of the Quantitative Methods in HIV/AIDS workshop series that is offered to PreMiEr members in partnership with the Duke Center for AIDS research (funded through a NIH R25 Research Education Program).

Participants in this series must register for all six workshops through this link by Monday, January 15, 2024. Note that PreMiEr is not responsible for confirming this registration or other details of this series. The workshops will be held in 214 Hock Plaza at Duke University, and are open to non-Duke participants. Prior knowledge of R is required.

Statistics Workshops (Jan 22 - Feb 26)

For more information, visit this page.

Day 1 Breakdown of an Experiment Monday, Jan 22 1 – 4 PM 214 Hock Plaza
Day 2 Probability, Distributions, and Confidence Intervals Monday, Jan 29 1 – 4 PM 214 Hock Plaza
Day 3 Hypothesis Testing and Power/Sample Size Monday, Feb 5 1 – 4 PM 214 Hock Plaza
Day 4 Linear regression, categorical predictors, interaction effect Monday, Feb 12 1 – 4 PM 214 Hock Plaza
Day 5 Logistic regression and classification models Monday, Feb 19 1 – 4 PM 214 Hock Plaza
Day 6 High-dimensional predictive models, cross-validation Monday, Feb 26 1 – 4 PM 214 Hock Plaza